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Data from: Genome resources for Thelonectria rubi, the causal agent of Nectria canker of caneberries

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posted on 2024-02-15, 20:19 authored by Demetra N. Skaltsas, Catalina Salgado-SalazarCatalina Salgado-Salazar
<p><em>Thelonectria rubi</em> is the causal agent of <em>Nectria</em> canker of <em>Rubus</em> spp. Here, we report a high-quality draft genome sequence for this pathogen, which also represents the first genome sequence for a <em>Thelonectria</em> species. The genome assembly was 44.6 Mb in size, assembled into 669 scaffolds and consisting of 12,973 predicted protein-coding genes. The availability of genome data for <em>T. rubi</em> provides a critical additional resource for an important plant pathogen and will be useful for fungal biology, comparative genomic, taxonomic and population studies of this and related species.</p> <p>Whole-genome gene predictions and raw sequencing reads of <em>Thelonectria rubi</em> isolate CBS 177.27 are presented. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Augustus gene predictions.</p> <p>File Name: Trubi<em>augustus.fa</em>.zip</p></li><br><li><p>Resource Title: Illumina sequencing reads with quality scores.</p> <p>File Name: T.rubiCBS17727_illumina<em>reads.R1.1.fastq</em>.zip</p></li></ul><p></p>

Funding

USDA-ARS: 8042-22000-298-00-D

Oak Ridge Institute for Science and Education

U.S. Department of Energy: DE-AC05-06OR23100

History

Data contact name

Salgado-Salazar, Catalina

Data contact email

catalina.salgado@usda.gov

Publisher

Ag Data Commons

Intended use

for its use in comparative genomics

Theme

  • Not specified

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

Nectria; Rubus; nucleotide sequences; genome assembly; genes; plant pathogens; mycology; genomics

OMB Bureau Code

  • 005:00 - Department of Agriculture

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301
  • 303

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Skaltsas, Demetra N.; Salgado-Salazar, Catalina (2020). Data from: Genome resources for Thelonectria rubi, the causal agent of Nectria canker of caneberries. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518500

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