Data from: Genome analyses of fungal pathogens Neonectria faginata and Neonectria coccinea
Protein predictions using Augustus web for the fungi Neonectria coccinea and N. faginata, as well as protein prediction of closely related species N. ditissima, and Corinectria fuckeliana.
Resources in this dataset:
Resource Title: Protein prediction dataset for Neonectria faginata isolate A.R. 4307.
File Name: AR4307_augustusRev.fasta
Resource Description: Protein prediction dataset
Resource Title: Protein prediction data set for Neonectria ditissima isolate CBS 226.31.
File Name: CBS22631_augustus.fasta
Resource Description: Protein prediction data set
Resource Title: Protein prediction file for Neonectria coccinea isolate CBS 119158.
File Name: CBS119158_augustus.fasta
Resource Description: Protein prediction file
Resource Title: Protein prediction file of Corinectria fuckeliana isolate CBS 125109.
File Name: CBS125109_augustus.fasta
Resource Description: Protein prediction file
Funding
USDA-ARS: 8042-22000-298-00D
History
Data contact name
Salgado-Salazar, CatalinaData contact email
catalina.salgado@usda.govPublisher
Ag Data CommonsIntended use
Research only. The predicted proteome of fungi can be functionally annotated to determine molecular activities of gene products.Use limitations
Research only.Temporal Extent Start Date
2020-10-22Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-69.114990234375,45.294935556934]},"type":"Feature","properties":{}},{"geometry":{"type":"Point","coordinates":[-72.09228515625,44.037010249008]},"type":"Feature","properties":{}},{"geometry":{"type":"Point","coordinates":[10.0634765625,51.38806611676]},"type":"Feature","properties":{}},{"geometry":{"type":"Point","coordinates":[173.49609375,-41.587715505005]},"type":"Feature","properties":{}}]}Geographic location - description
USA: Maine, USA: New Hampshire, Germany, New ZealandISO Topic Category
- biota
- environment
Ag Data Commons Group
- AgBioData
National Agricultural Library Thesaurus terms
fungi; pathogens; Neonectria; beech bark disease; mortality; forest stands; North America; Europe; disease control; genomics; genome assembly; proteome; proteins; mitogen-activated protein kinase; virulence; disease severity; polysaccharides; secondary metabolites; biosynthesis; cytochrome-c oxidase; mitochondrial genome; mitochondrial DNA; introns; Fagus grandifolia; Fagus sylvatica; forests; trophic relationshipsOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 303
Pending citation
- No
Public Access Level
- Public