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Data from: Genome-wide Association and Genomic Prediction Identifies Soybean Cyst Nematode Resistance in Common Bean Including a Syntenic Region to Soybean Rhg1 Locus
dataset
posted on 2023-12-14, 14:19 authored by Liwei Wen, Hao-Xun Chang, Patrick J. Brown, Leslie L. Domier, Glen L. HartmanA panel of single nucleotide polymorphisms (SNPs) for 363 common bean accessions was generated. A genome-wide association study (GWAS) was applied to detect SNPs significantly associated with resistance to Heterodera glycines (HG) also known as the soybean cyst nematode (SCN) in the core collection of common bean, Phaseolus vulgaris. There were 84,416 SNPs identified in 363 common bean accessions.
Resources in this dataset:
Resource Title: SNP Location on Chromosomes.
File Name: SNP locations chr and position.csv
Resource Title: Bean lines and genotypes.
File Name: Bean lines and genotype.csv
Funding
Agricultural Research Service,
History
Data contact name
Hartman, Glen L.Data contact email
glen.hartman@ars.usda.govPublisher
Ag Data CommonsTheme
- Not specified
ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
single nucleotide polymorphism; beans; genome-wide association study; Heterodera glycines; Phaseolus vulgarisOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 303
Pending citation
- No
Public Access Level
- Public