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Data from: Genetic diversity, population structure, and selection of core germplasm sets from the USDA sweetpotato (Ipomoea batatas) collection

dataset
posted on 2023-11-30, 11:14 authored by William RutterWilliam Rutter

R scripts and associated data used to select the sweetpotato core sets described in: Slonecki, T. J., Rutter, W. B., Olukolu, B. A., Yencho, G. C., Jackson, D. M., & Wadl, P. A. (2023). Genetic diversity, population structure, and selection of breeder germplasm subsets from the USDA sweetpotato (Ipomoea batatas) collection. Frontiers in Plant Science, 13. https://doi.org/10.3389/fpls.2022.1022555

Resources in this dataset:

Title: Sweetpotato_phenotype_classification_scripts File name: SP_phenotype_classification_scripts_7-29-21.R Description: R Scripts used to format, classify, and retain individuals with 'rare' phenotypes into the core collections, generating the reduced 508 accession dataset from which the core sets were selected

Title: Sweetpotato_core_set_selection_scripts File name: Core_set_selection_permutations_8-24-20.R Description: Core set sampling scripts derived from previous R scripts and data generated in "SP_phenotype_classification_scripts"

Title: Original Phenotype data File name: Core_Sets_VanRaden_Complete_Passport_Phenotype_July_2021.xlsx Description: Phenotype data downloaded from GRIN sweetpotato collection and used for core set selection

Title: SP_core_selection_Rdata File name: SP_core_selection_data_7-30-21.zip Description: Data sets used in conjunction with Rscripts from Slonecki et. al. 2022

Funding

Agricultural Research Service, 6080-22000-030-000-D

History

Data contact name

Rutter, William

Data contact email

William.rutter@ars.usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2021-07-21

Frequency

  • notPlanned

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-440.07165530697,32.796163806572]},"type":"Feature","properties":{}}]}

Geographic location - description

2700 Savannah Hwy. Charleston, South Carolina 29414

ISO Topic Category

  • farming

Ag Data Commons Group

  • ARS Culture Collection

National Agricultural Library Thesaurus terms

genetic variation; population structure; germplasm; sweet potatoes; Ipomoea batatas; phenotype

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301
  • 303

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Rutter, William B. (2023). Data from: Genetic diversity, population structure, and selection of core germplasm sets from the USDA sweetpotato (Ipomoea batatas) collection. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1528523

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