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Mcap_genemodels_1.0_aa.fas (14.86 MB)
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Mcap_genemodels_1.0_cds.fas (44.18 MB)
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Mcap_genemodels_1.0.gff (167.87 MB)
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Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing
dataset
posted on 2024-02-13, 13:25 authored by Martin Helmkampf, M. Renee Bellinger, Scott M. Geib, Sheina B. Sim, Misaki TakabayashiTHIS DATA HAS BEEN UPDATED: PLEASE SEE http://dx.doi.org/10.15482/USDA.ADC/1503958 FOR THE UPDATED VERSION.
Gene models for protein-coding genes in the genome of the rice coral Montipora capitata, Hawaii Island. Annotation was performed with Augustus v3.3.1, using RNA-seq data as extrinsic evidence. Gene structures (.gff), coding sequences (_cds.fas), and amino acid sequences (_aa.fas) are provided.
Resources in this dataset:
Resource Title: Montipora capitata gene models v1.0, amino acid sequence.
File Name: Mcap_genemodels_1.0_aa.fas
Resource Title: Montipora capitata gene models v1.0, coding sequence.
File Name: Mcap_genemodels_1.0_cds.fas
Resource Title: Montipora capitata gene models v1.0, gene structure (GFF).
File Name: Mcap_genemodels_1.0.gff
Funding
National Science Foundation: EPS-0903833
National Science Foundation: 0833211
National Science Foundation: 1345247
USDA-ARS: 2040-22430-026-00-D
History
Data contact name
Helmkampf, MartinData contact email
mhelmkam@hawaii.eduPublisher
Ag Data CommonsTheme
- Not specified
Geographic location - description
Waiopae, Hawaii IslandISO Topic Category
- biota
National Agricultural Library Thesaurus terms
corals; models; genes; sequence analysis; amino acid sequences; genome assembly; HawaiiPending citation
- No
Public Access Level
- Public