Data from: Differential gene expression in red imported fire ant (Solenopsis invicta) (Hymenoptera: Formicidae) larval and pupal stages
12 files (6 sets of paired Illumina FASTQ files) transcriptomes (expressed genes) of the fourth (final) larval and early (white) pupal stages of Solenopsis invicta from Mississippi Delta.
Resources in this dataset:
Resource Title: RNA-seq Larva sample Colony 1.
File Name: A01L4_1.zip
Resource Description: This is the first of the paired samples; the total set includes 3 paired Illumina files from larvae, and 3 paired Illumina files from pupae. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.
Resource Software Recommended: A01L4_1,url: www.cyverse.org
Resource Title: RNA-seq Larva sample Colony 1.
File Name: A01L4_2.zip
Resource Description: This is the second of the paired samples for larvae from Colony 1. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.
Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org
Resource Title: RNA-seq pupa sample Colony 1.
File Name: X01wp_1.zip
Resource Description: This is the first of the paired samples. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.
Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org
Resource Title: RNA-seq pupa sample Colony 1..
File Name: X01wp_2.zip
Resource Description: This is the second of the paired samples. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.
Resource Software Recommended: Any assembly program that can use Illumina paired files,url: www.cyverse.org
Resource Title: RNA-seq larva sample Colony 2.
File Name: B02L4_2.zip
Resource Description: This is the second of the paired samples from Colony 2.
Resource Software Recommended: Any assembly program that handles Illumina paired files for input,url: www.cyverse.org
Resource Title: RNA-seq larva sample Colony 2.
File Name: B02L4_1.zip
Resource Description: This is the first of the paired larva samples. Colony 2 samples include larva paired Illumina files B02L4_1 and B02L4_2, and paired pupa files Y02wp_1 and Y02wp_2.
Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org
Resource Title: RNA-seq pupa sample Colony 2.
File Name: Y02wp_1.zip
Resource Description: This is the first of the paired pupa files. The set includes Y02wp_1 and Y02wp_2.
Resource Software Recommended: Any assembly program that accepts Illumina paired reads,url: www.cyverse.org
Resource Title: RNA-seq pupa sample Colony 2.
File Name: Y02wp_2.zip
Resource Description: This is the second of the paired samples; the Colony 2 pupa samples are Y02wp_1 and Y02wp_2.
Resource Software Recommended: Any assembly program that accepts Illumina paired data files,url: www.cyverse.org
Resource Title: RNA-seq pupa sample Colony 3.
File Name: Z03wp_1.zip
Resource Description: This is the first of paired sample files: the set includes Z03wp_1 and Z03wp_2.
Resource Title: RNA-seq pupa sample Colony 3.
File Name: Z03wp_2.zip
Resource Description: This is the second of the paired sample files: the set includes Z03wp_1 and Z03wp_2
Resource Title: RNA-seq larva sample Colony 3.
File Name: C03L4_1.zip
Resource Description: This is the first of the paired sample files: the set includes C03L4_1 and C03L4_2.
Resource Title: RNA-seq larva sample Colony 3.
File Name: C03L4_2.zip
Resource Description: This is the second of the paired sample files: the set includes C03L4_1 and C03L4_2
Funding
Agricultural Research Service, 6066-22320-009-00D
History
Data contact name
Allen, MargaretData contact email
meg.allen@usda.govPublisher
Ag Data CommonsIntended use
Identify genes expressed in fire ant brood. These data will be used in a CRIS project "Products for Invasive Ant Control" to identify RNA interference knockdown target genes.Use limitations
These data were collected from a specific and unique geographic region infested by imported fire ants. The MS Delta is subject to extreme heat, humidity, and regular flood/drought cycles. It is also intensively cultivated.Temporal Extent Start Date
2016-03-11Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-91.03344,33.44734]},"type":"Feature","properties":{}}]}Geographic location - description
Mississippi Delta RegionISO Topic Category
- biota
- environment
National Agricultural Library Thesaurus terms
transcriptome; genes; larvae; pupae; river deltas; Solenopsis invicta; gene expression regulation; FormicidaeOMB Bureau Code
- 005:18 - Agricultural Research Service
- 005:00 - Department of Agriculture
OMB Program Code
- 005:037 - Research and Education
ARS National Program Number
- 104
Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public