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Data from: Differential gene expression in red imported fire ant (Solenopsis invicta) (Hymenoptera: Formicidae) larval and pupal stages

dataset
posted on 2023-12-14, 14:13 authored by Margaret Allen, Michael Grodowitz, Michael Sparks, Joshua Rhoades
<p>12 files (6 sets of paired Illumina FASTQ files) transcriptomes (expressed genes) of the fourth (final) larval and early (white) pupal stages of <em>Solenopsis invicta</em> from Mississippi Delta. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: RNA-seq Larva sample Colony 1.</p> <p>File Name: A01L4_1.zip</p><p>Resource Description: This is the first of the paired samples; the total set includes 3 paired Illumina files from larvae, and 3 paired Illumina files from pupae. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.</p><p>Resource Software Recommended: A01L4_1,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq Larva sample Colony 1.</p> <p>File Name: A01L4_2.zip</p><p>Resource Description: This is the second of the paired samples for larvae from Colony 1. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.</p><p>Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq pupa sample Colony 1.</p> <p>File Name: X01wp_1.zip</p><p>Resource Description: This is the first of the paired samples. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.</p><p>Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq pupa sample Colony 1..</p> <p>File Name: X01wp_2.zip</p><p>Resource Description: This is the second of the paired samples. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.</p><p>Resource Software Recommended: Any assembly program that can use Illumina paired files,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq larva sample Colony 2.</p> <p>File Name: B02L4_2.zip</p><p>Resource Description: This is the second of the paired samples from Colony 2.</p><p>Resource Software Recommended: Any assembly program that handles Illumina paired files for input,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq larva sample Colony 2.</p> <p>File Name: B02L4_1.zip</p><p>Resource Description: This is the first of the paired larva samples. Colony 2 samples include larva paired Illumina files B02L4_1 and B02L4_2, and paired pupa files Y02wp_1 and Y02wp_2.</p><p>Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq pupa sample Colony 2.</p> <p>File Name: Y02wp_1.zip</p><p>Resource Description: This is the first of the paired pupa files. The set includes Y02wp_1 and Y02wp_2.</p><p>Resource Software Recommended: Any assembly program that accepts Illumina paired reads,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq pupa sample Colony 2.</p> <p>File Name: Y02wp_2.zip</p><p>Resource Description: This is the second of the paired samples; the Colony 2 pupa samples are Y02wp_1 and Y02wp_2.</p><p>Resource Software Recommended: Any assembly program that accepts Illumina paired data files,url: www.cyverse.org </p></li><br><li><p>Resource Title: RNA-seq pupa sample Colony 3.</p> <p>File Name: Z03wp_1.zip</p><p>Resource Description: This is the first of paired sample files: the set includes Z03wp_1 and Z03wp_2.</p></li><br><li><p>Resource Title: RNA-seq pupa sample Colony 3.</p> <p>File Name: Z03wp_2.zip</p><p>Resource Description: This is the second of the paired sample files: the set includes Z03wp_1 and Z03wp_2</p></li><br><li><p>Resource Title: RNA-seq larva sample Colony 3.</p> <p>File Name: C03L4_1.zip</p><p>Resource Description: This is the first of the paired sample files: the set includes C03L4_1 and C03L4_2.</p></li><br><li><p>Resource Title: RNA-seq larva sample Colony 3.</p> <p>File Name: C03L4_2.zip</p><p>Resource Description: This is the second of the paired sample files: the set includes C03L4_1 and C03L4_2</p></li></ul><p></p>

Funding

Agricultural Research Service, 6066-22320-009-00D

History

Data contact name

Allen, Margaret

Data contact email

meg.allen@usda.gov

Publisher

Ag Data Commons

Intended use

Identify genes expressed in fire ant brood. These data will be used in a CRIS project "Products for Invasive Ant Control" to identify RNA interference knockdown target genes.

Use limitations

These data were collected from a specific and unique geographic region infested by imported fire ants. The MS Delta is subject to extreme heat, humidity, and regular flood/drought cycles. It is also intensively cultivated.

Temporal Extent Start Date

2016-03-11

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-91.03344,33.44734]},"type":"Feature","properties":{}}]}

Geographic location - description

Mississippi Delta Region

ISO Topic Category

  • biota
  • environment

National Agricultural Library Thesaurus terms

transcriptome; genes; larvae; pupae; river deltas; Solenopsis invicta; gene expression regulation; Formicidae

OMB Bureau Code

  • 005:18 - Agricultural Research Service
  • 005:00 - Department of Agriculture

OMB Program Code

  • 005:037 - Research and Education

ARS National Program Number

  • 104

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Allen, Margaret; Grodowitz, Michael; Sparks, Michael; Rhoades, Joshua (2018). Data from: Differential gene expression in red imported fire ant (Solenopsis invicta) (Hymenoptera: Formicidae) larval and pupal stages. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1461500

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