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Data from: Dataset of bovine mammary gland dry secretion proteome from the end of lactation through day 21 of the dry period
This dataset is a label-free quantitation of proteins milk and dry secretions from the end of lactation through day 21 of the dry period using liquid chromatography with tandem mass spectrometry (LC-MS/MS). The data supplied in this article supports the accompanying publication entitled “Characterization of bovine mammary gland dry secretions and their proteome from the end of lactation through day 21 of the dry period”. The Thermo mass spectrometry raw files and MaxQuant files have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset number PXD017837.
Resources in this dataset:
Resource Title: Characterization of Bovine Dry Secretions and their Proteome from the End of Lactation Through Day 21 of the Dry Period - ProteomeXchange Consortium via the PRIDE partner repository, Project PXD017837.
File Name: Web Page, url: https://www.ebi.ac.uk/pride/archive/projects/PXD017837
Thermo raw file code for Pride raw files and supplemental Excel files. The 3 technical replicates are denoted as a letter A, B and C. The number following is the cow identification number for 11 cows used. The final two-digit number after the underscore is the day sampled where _01 = day 1, _03 = day 3, _10 = day 10 and _21 = day 21 of dry period. For example, A1313_01 is technical replicate A for cow 1313 collected on day 1. B1313_03 is technical replicate B for cow 1313 collected on day 3. Details of sample and data processing protocols are provided.
Funding
USDA-ARS: 3625-32000-115-000
History
Data contact name
Reinhardt, Timothy A.Data contact email
tim.reinhardt@usda.govPublisher
Data in BriefIntended use
For dairy scientists with interest in mammary involution, and the interface of the dry period with the development of mastitis in the next lactation and accelerated involution approaches to reduce mastitis. These data can be mined to help understand the factors responsible for slowed but variable bacterial growth in dry secretions, and provide biomarkers for studying accelerated involution approaches to reduce mastitis.Temporal Extent Start Date
2019-01-01Temporal Extent End Date
2020-05-01Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-93.577017487551,42.04286656648]},"type":"Feature","properties":{}}]}Geographic location - description
National Animal Disease Center, USDA/ARS, Ames, IowaISO Topic Category
- biota
- farming
National Agricultural Library Thesaurus terms
mammary glands; secretion; proteome; lactation; data collection; milk; liquid chromatography; tandem mass spectrometry; dairy cows; bovine mastitis; mammary involution; immune response; protein content; lactoferrin; bacterial growth; growth retardation; coliform bacteria; pathogens; whey protein; antibacterial proteins; antibacterial properties; dry period (lactation)OMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 103
Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public