Ag Data Commons
Browse

Data from: Control of chrysanthemum flowering through integration with an aging pathway

dataset
posted on 2024-02-13, 13:56 authored by Qian Wei, Chao Ma, Yanjie Xu, Tianle Wang, Yiyu Chen, Jing Lü, Lili Zhang, Cai-Zhong Jiang, Bo Hong, Junping Gao
<p>Age, as a threshold of floral competence acquisition, prevents precocious flowering when there is insufficient biomass, and ensures flowering independent of environmental conditions; however, the underlying regulatory mechanisms are largely unknown. In this study, silencing the expression of a nuclear factor gene, <em>CmNF-YB8</em>, from the short day plant chrysanthemum (<em>Chrysanthemum morifolium</em>), results in precocious transition from juvenile to adult, as well as early flowering, regardless of day length conditions. The expression of SQUAMOSA PROMOTER BINDING-LIKE (SPL) family members, <em>SPL3</em>, <em>SPL5</em>, and <em>SPL9</em>, is upregulated in <em>CmNF-YB8</em>-RNAi plants, while expression of the microRNA, <em>cmo-MIR156</em>, is downregulated. In addition, <em>CmNF-YB8</em> is shown to bind to the promoter of the <em>cmo-MIR156</em> gene. Ectopic expression of <em>cmo-miR156</em>, using a virus-based microRNA expression system, restores the early flowering phenotype caused by <em>CmNF-YB8</em> silencing. These results show that <em>CmNF-YB8</em> influences flowering time through directly regulating the expression of <em>cmo-MIR156</em> in the aging pathway.</p> <p>RNA-seq data associated with this study has been deposited in NCBI SRA database under accession code PRJNA393366. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Supplementary Data 1 - Differentially transcribed genes in CmNF-YB8-RNAi plants compared with wild type chrysanthemum .</p> <p>File Name: Web Page, url: <a href="https://static-content.springer.com/esm/art:10.1038/s41467-017-00812-0/MediaObjects/41467_2017_812_MOESM2_ESM.xlsx">https://static-content.springer.com/esm/art:10.1038/s41467-017-00812-0/MediaObjects/41467_2017_812_MOESM2_ESM.xlsx</a> </p><p>Provides Accession, Annotation, and Fold Change (Excel download)</p></li></ul><p></p>

Funding

National Natural Science Foundation of China: 31372094

National Natural Science Foundation of China: 31572157

National Natural Science Foundation of China: 31171990

History

Data contact name

Hong, Bo

Data contact email

hongbo1023@cau.edu.cn

Publisher

NCBI SRA database

Temporal Extent Start Date

2017-10-10

Theme

  • Not specified

Geographic Coverage

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

biomass; genes; Chrysanthemum morifolium; juveniles; adults; photoperiod; microRNA; phenotype; flowering date; sequence analysis; databases; plant age; harvest date; gene expression regulation

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Wei, Qian; Ma, Chao; Xu, Yanjie; Wang, Tianle; Chen, Yiyu; Lü, Jing; Zhang, Lili; Jiang, Cai-Zhong; Hong, Bo; Gao, Junping (2019). Data from: Control of chrysanthemum flowering through integration with an aging pathway. NCBI SRA database.