Data from: Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass
Dollar spot is one of the most destructive globally distributed diseases of turfgrass. The identity of the fungus responsible for the disease has been the subject of debate for more than 75 years. These datasets provide the phylogenetic evidence from three nucleotide sequence markers (CaM, ITS and Mcm7) that underlie the establishment of the new fungal genus Clarireedia, which includes four species that cause turfgrass dollar spot disease: Clarireedia homoeocarpa, C. bennettii, C. jacksonii, and C. monteithiana. Datasets include the DNA sequence alignments for the CaM, ITS and Mcm7 markers for exemplar Clarireedia isolates, and the complete combined phylogenetic dataset and phylogenetic tree file.
Resources in this dataset:
Resource Title: DNA sequence alignment, combined dataset.
File Name: Allgenes_alignment.txt
Resource Title: Phylogenetic tree file.
File Name: Allgenes_phylogenyMrBayes.nex.con.tre.txt
Resource Description: Derived from analysis of DNA sequence alignment
Resource Title: DNA sequence alignment of CaM marker for dollar spot fungi exemplars.
File Name: CaM_DS_diagnostic sites.txt
Resource Title: DNA sequence alignment of ITS marker for dollar spot fungi exemplars.
File Name: ITS_DS_diagnostic sites.txt
Resource Title: DNA sequence alignment of Mcm7 marker for dollar spot fungi exemplars.
File Name: Mcm7_DS_diagnostic sites.txt
Funding
USDA-ARS: 8042-22000-298-00-D
History
Data contact name
Crouch, Jo AnneData contact email
joanne.crouch@ars.usda.govPublisher
Ag Data CommonsIntended use
These datasets can be used as as reference barcodes to identify dollar spot fungi to the species level.Theme
- Not specified
Geographic location - description
worldwideISO Topic Category
- biota
National Agricultural Library Thesaurus terms
fungi; turf grasses; data collection; barcoding; phylogeny; nucleotide sequences; internal transcribed spacers; DNA; sequence alignment; plant pathogenic fungi; plant pathogens; pest identification; species identification; pathogen identification; Ascomycota; Leotiomycetes; Rutstroemia; SclerotiniaOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 303
Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public