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Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana

dataset
posted on 2025-07-28, 15:35 authored by STEVEN CANNONSTEVEN CANNON, Hyun-Oh Lee, Hallie Wright, Brandon Jordan, Vikas Belamkar, Jugpreet Singh, Scott Kalberer, Josh Clevenger
<p dir="ltr">The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al., 2024). Apios americana produces starchy, high-protein tubers that were used by indigenous Native Americans. Apios americana is found throughout eastern and central North America, from Louisiana in the south to Quebec in the north. Apios priceana is a rare legume species, found scattered locations in the North American Southeast (Alabama, Mississippi, Kentucky, and Tennessee). The plant is federally listed as a threatened species. It has a vining habit and produces an edible, thickened storage root.</p>

Funding

USDA-ARS: 5030-21000-071-000D

USDA-ARS: 0201-88888-003-000D

USDA-ARS: 0201-88888-002-000D

DOE-NERSC: BER-ERCAP0027438

History

Data contact name

Cannon, Steven B.

Data contact email

steven.cannon@usda.gov

Publisher

Ag Data Commons

Intended use

The data in this collection represent gene annotations for the species Apios americana and Apios priceana. The intended use is for research in plant biology and evolutionary biology.

Temporal Extent Start Date

2025-04-07

Theme

  • Non-geospatial

Geographic Coverage

Ames, Iowa and Lee County, Mississippi

Geographic location - description

Apios americana accession LA2127 was the result of a cross made in Louisiana, between unidentified parental lines. The strain was grown and prepared for sequencing at Ames, Iowa. The Apios priceana strain MO19963523 was grown at the Missouri Botanical Gardens, from seed deriving from a plant in in Lee County Mississippi, 1 mi. to the east of Pontotoc-Lee County line.

ISO Topic Category

  • farming
  • biota

National Agricultural Library Thesaurus terms

genome assembly; Apios americana; genes; Louisiana; Iowa; Missouri; botanical gardens; Mississippi; plant biology; evolutionary biology; haplotypes

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

ARIS Log Number

427796

Pending citation

  • Yes

Public Access Level

  • Public

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