Ag Data Commons
Browse
.XLS
1471-2229-7-5-s1.xls (662.5 kB)
.CSV
BBGD-data-dictionary.csv (0.35 kB)
1/0
2 files

Data from: BBGD: an online database for blueberry genomic data

Download all (662.85 kB)
dataset
posted on 2023-11-30, 07:10 authored by Nadim W. Alkharouf, Anik L. Dhanaraj, Dhananjay Naik, Christopher Overall, Benjamin F. Matthews, Lisa J. Rowland

This dataset is supplemental to the article "BBGD: an online database for blueberry genomic data," (2007); it is titled "list of genes printed on microarray slides."

The article, "BBGD: an online database for blueberry genomic data," (2007) involving blueberry cold hardiness experiments has a list of all the genes that were printed on microarray slides. This dataset, supplemental to the article, is called: "list of genes printed on microarray slides." 1471-2229-7-5-s1.xls 663k. By using the BBGD database, researchers developed EST-based markers for mapping, and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures. BBGD (http://bioinformatics.towson.edu/BBGD/) is a public online database, and was developed for blueberry genomics. BBGD is both a sequence and gene expression database: it stores both EST and microarray data, and allows scientists to correlate expression profiles with gene function. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure.

Data was collected sometime between 2000 and 2007 - exact dates are unknown.


Resources in this dataset:

  • Resource Title: List of genes printed on microarray slides, 1471-2229-7-5-s1.xls.

    File Name: 1471-2229-7-5-s1.xls


  • Resource Title: Data dictionary.

    File Name: BBGD-data-dictionary.csv

    Resource Description: Defines fields for list of genes.

Funding

Agricultural Research Service

History

Data contact name

Alkharouf, Nadim W.

Data contact email

nalkharouf@towson.edu

Publisher

BMC Plant Biology

Temporal Extent Start Date

2000-01-01

Temporal Extent End Date

2007-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"MultiPolygon","coordinates":[[[[-78.40848,25.2103],[-78.40848,23.71],[-77.53466,23.71],[-77.53466,25.2103],[-78.40848,25.2103]]],[[[-59.419494188054,51.632094224649],[-59.419494188054,46.618291734395],[-52.648098720904,46.618291734395],[-52.648098720904,51.632094224649],[-59.419494188054,51.632094224649]]],[[[-140.99778,71.92053],[-140.99778,41.675105088867],[-55.68338,41.675105088867],[-55.68338,71.92053],[-140.99778,71.92053]]],[[[-119.40199,73.31459],[-119.40199,68.53554],[-100.98078,68.53554],[-100.98078,73.31459],[-119.40199,73.31459]]],[[[-106.94,73.64],[-106.94,72.76],[-104.5,72.76],[-104.5,73.64],[-106.94,73.64]]],[[[-90.205160285182,73.803815823045],[-90.205160285182,61.930897121826],[-61.851981370681,61.930897121826],[-61.851981370681,73.803815823045],[-90.205160285182,73.803815823045]]],[[[-102.5,73.84389],[-102.5,71.27285],[-96.54,71.27285],[-96.54,73.84389],[-102.5,73.84389]]],[[[-96.033745083382,74.134906724739],[-96.033745083382,72.024596259236],[-90.509792853543,72.024596259236],[-90.509792853543,74.134906724739],[-96.033745083382,74.134906724739]]],[[[-125.92894873747,74.44893],[-125.92894873747,70.90164],[-115.51081,70.90164],[-115.51081,74.44893],[-125.92894873747,74.44893]]],[[[-102.56552,76.72],[-102.56552,74.89744],[-97.704415,74.89744],[-97.704415,76.72],[-102.56552,76.72]]],[[[-117.7104,76.79417],[-117.7104,74.39427],[-105.70498,74.39427],[-105.70498,76.79417],[-117.7104,76.79417]]],[[[-97.121378953829,77.161388658345],[-97.121378953829,74.392307033985],[-79.833932868148,74.392307033985],[-79.833932868148,77.161388658345],[-97.121378953829,77.161388658345]]],[[[-122.8549252936,77.645286770326],[-122.8549252936,75.900018622533],[-116.19858659551,75.900018622533],[-116.19858659551,77.645286770326],[-122.8549252936,77.645286770326]]],[[[-96.436304490936,77.834629218244],[-96.436304490936,77.491342678529],[-93.720656297566,77.491342678529],[-93.720656297566,77.834629218244],[-96.436304490936,77.834629218244]]],[[[-113.53427893762,78.152956041162],[-113.53427893762,77.409228827617],[-109.85445187055,77.409228827617],[-109.85445187055,78.152956041162],[-113.53427893762,78.152956041162]]],[[[-112.54209143762,78.849993598131],[-112.54209143762,78.40691986766],[-109.6631457182,78.40691986766],[-109.6631457182,78.849993598131],[-112.54209143762,78.849993598131]]],[[[-98.631984422586,78.871930243638],[-98.631984422586,77.850597235822],[-95.559277920295,77.850597235822],[-95.559277920295,78.871930243638],[-98.631984422586,78.871930243638]]],[[[-105.49228919149,79.301593939929],[-105.49228919149,77.907544664207],[-99.670939093814,77.907544664207],[-99.670939093814,79.301593939929],[-105.49228919149,79.301593939929]]],[[[-96.70972,81.25739],[-96.70972,78.21533],[-85.81435,78.21533],[-85.81435,81.25739],[-96.70972,81.25739]]],[[[-91.58702,83.23324],[-91.58702,76.17812],[-61.85,76.17812],[-61.85,83.23324],[-91.58702,83.23324]]],[[[-85.941725430022,11.217119248902],[-85.941725430022,8.225027980986],[-82.546196255203,8.225027980986],[-82.546196255203,11.217119248902],[-85.941725430022,11.217119248902]]],[[[-84.974911058273,23.188610744718],[-84.974911058273,19.855480861892],[-74.178024868451,19.855480861892],[-74.178024868451,23.188610744718],[-84.974911058273,23.188610744718]]],[[[-71.945112067336,19.884910590082],[-71.945112067336,17.598564357977],[-68.317943284769,17.598564357977],[-68.317943284769,19.884910590082],[-71.945112067336,19.884910590082]]],[[[-73.297,83.64513],[-73.297,60.03676],[-12.20855,60.03676],[-12.20855,83.64513],[-73.297,83.64513]]],[[[-78.337719285786,18.524218451405],[-78.337719285786,17.70111623786],[-76.199658576142,17.70111623786],[-76.199658576142,18.524218451405],[-78.337719285786,18.524218451405]]],[[[-74.458033616825,19.915683905512],[-74.458033616825,18.030992743395],[-71.624873216423,18.030992743395],[-71.624873216423,19.915683905512],[-74.458033616825,19.915683905512]]],[[[-89.353325975283,16.005405788634],[-89.353325975283,12.984685777229],[-83.147219000974,12.984685777229],[-83.147219000974,16.005405788634],[-89.353325975283,16.005405788634]]],[[[-92.229248623406,17.819326076727],[-92.229248623406,13.735337632701],[-88.225022752622,13.735337632701],[-88.225022752622,17.819326076727],[-92.229248623406,17.819326076727]]],[[[-117.12776,32.72083],[-117.12776,14.538828640191],[-86.811982388033,14.538828640191],[-86.811982388033,32.72083],[-117.12776,32.72083]]],[[[-82.965783047197,9.6116100122415],[-82.965783047197,7.2205414900965],[-77.24256649444,7.2205414900965],[-77.24256649444,9.6116100122415],[-82.965783047197,9.6116100122415]]],[[[-87.668493415055,15.016267198136],[-87.668493415055,10.726839097532],[-83.147219000974,10.726839097532],[-83.147219000974,15.016267198136],[-87.668493415055,15.016267198136]]],[[[-67.242427537694,18.520601101144],[-67.242427537694,17.94655345303],[-65.591003790943,17.94655345303],[-65.591003790943,18.520601101144],[-67.242427537694,18.520601101144]]],[[[-90.095554572291,14.424132798719],[-90.095554572291,13.149016831917],[-87.723502977229,13.149016831917],[-87.723502977229,14.424132798719],[-90.095554572291,14.424132798719]]],[[[-61.95,10.89],[-61.95,10],[-60.895,10],[-60.895,10.89],[-61.95,10.89]]],[[[-156.07347,20.26721],[-156.07347,18.91619],[-154.80741,18.91619],[-154.80741,20.26721],[-156.07347,20.26721]]],[[[-156.71055,21.01249],[-156.71055,20.57241],[-155.99566,20.57241],[-155.99566,21.01249],[-156.71055,21.01249]]],[[[-157.32521,21.21958],[-157.32521,21.06873],[-156.75824,21.06873],[-156.75824,21.21958],[-157.32521,21.21958]]],[[[-158.29265,21.71696],[-158.29265,21.26442],[-157.65283,21.26442],[-157.65283,21.71696],[-158.29265,21.71696]]],[[[-159.80051,22.23618],[-159.80051,21.88299],[-159.34512,21.88299],[-159.34512,22.23618],[-159.80051,22.23618]]],[[[-124.68721008301,49.38905],[-124.68721008301,25.08],[-66.96466,25.08],[-66.96466,49.38905],[-124.68721008301,49.38905]]],[[[-171.79111060289,63.782515367276],[-171.79111060289,62.976931464278],[-168.6894394603,62.976931464278],[-168.6894394603,63.782515367276],[-171.79111060289,63.782515367276]]],[[[-168.11056006577,71.357763576942],[-168.11056006577,54.404173082082],[-129.97999426336,54.404173082082],[-129.97999426336,71.357763576942],[-168.11056006577,71.357763576942]]]]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • farming

National Agricultural Library Thesaurus terms

blueberries; microarray technology

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Alkharouf, Nadim W.; Dhanaraj, Anik L.; Naik, Dhananjay; Overall, Christopher; Matthews, Benjamin F.; Rowland, Lisa J. (2015). Data from: BBGD: an online database for blueberry genomic data. BMC Plant Biology. https://doi.org/10.15482/USDA.ADC/1173243

Usage metrics

    Categories

    Keywords

    blueberryBBGDgenomicsNP301Online databasedata.govARS

    Licence

    CC BY 4.0

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC