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Prom_GWAS_Leaf_Blight_2022.csv (17.53 kB)

Data from: A genome-wide association study of Nigerien and Senegalese sorghum germplasm of Exserohilum turcicum, the causal agent of leaf blight

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posted on 2024-05-28, 21:01 authored by LOUIS PROMLOUIS PROM

Sorghum supplies the daily calorie needs of millions of inhabitants in Senegal, West Africa. However, Exserohilum turcicum, causal agent of leaf blight significantly reduces the crop's productivity and profitability. Data based on a total of 120 sorghum lines (60 lines each from Niger and Senegal) planted in replicated plots in three locations in Senegal, West Africa. The leaf blight incidence and severity were collected by Louis K Prom, Mame Penda Sarr, Cyril Diatta, Coumba Fall, and Clint Magill. Disease incidence was based on the number of plants infected with leaf blight in a row divided by the total number of plants in the same row multiplied by 100. The severity scale 0 to 11 with mid-points, where 1=5.5, 2=15.5, 3=25.5, 4=35.5, 5=45.5, 6=55.5, 7=65.5, 8=75.5, 9=85.5, 10=95.5, and 11=100 previously described by Prom et al. 2023 was used. the dataset was used to perform genome-wide association studies to identify single-nucleotide polymorphisms associated with leaf blight incidence.

Funding

USDA-ARS: 3091-22000-040-00-D

History

Data contact name

Prom, Louis, K.

Data contact email

Louis.prom@usda.gov

Publisher

Ag Data Commons

Use limitations

None. Public domain

Temporal Extent Start Date

2022-10-18

Temporal Extent End Date

2023-06-09

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-14.452362, 14.497401]},"type":"Feature","properties":{}}]}

Geographic location - description

Senegal, West Africa: Latitude 14.4974 N and Longitude 14.4524 W. Senegal is located above the equator.

ISO Topic Category

  • farming
  • location

National Agricultural Library Thesaurus terms

genome-wide association study; germplasm; Exserohilum; leaf blight; Sorghum (Poaceae); Senegal; profitability; Niger; disease incidence; data collection; single nucleotide polymorphism

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 303

ARIS Log Number

409620

Pending citation

  • No

Public Access Level

  • Public