Data from: A First Look at the Ability to Use Genomic Prediction for Improving Ratooning Ability of Sugarcane

https://doi.org/10.15482/USDA.ADC/1528986
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dataset

posted on 2023-12-18, 20:22 authored by Md S. Sarif, Amanda M. Hulse-Kemp, Keo E. Corak, Alexander E Lipka, Per McCord

The filtered VCF file of 10501 SNPs from the 432 individuals in this study. This dataset was used for genome-wide association study (GWAS) and genomic prediction of sugarcane ratooning ability. It was developed using Rapid Genomics Capture-Seq technology. Resources in this dataset: <ul> <li>Resource Title: SNP data for 432 Sugarcane Clones File Name: sugarcane.10501.SNPs.432.Inds.vcf</li> </ul>

Funding

USDA-ARS: 6030-21000-006-00-D

USDA-ARS: 6066-21310-005-00D

History

Related Materials

1.
DOI - Is supplement to Islam, Md. S., Corak, K., McCord, P., Hulse-Kemp, A. M., & Lipka, A. E. (2023). A first look at the ability to use genomic prediction for improving the ratooning ability of sugarcane. Frontiers in Plant Science, 14. https://doi.org/10.3389/fpls.2023.1205999

Data contact name

Islam, Md. Sariful

Data contact email

md.islam@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2016-11-01

Temporal Extent End Date

2018-11-01

Theme

Not specified

Geographic Coverage

ISO Topic Category

farming

National Agricultural Library Thesaurus terms

genomics; prediction; ratooning; sugarcane; single nucleotide polymorphism; marker-assisted selection; genome-wide association study

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

ARS National Program Number

Primary article PubAg Handle

https://handle.nal.usda.gov/10113/8595539

Pending citation

Public Access Level

Public

Preferred dataset citation

Sarif, Md S.; Hulse-Kemp, Amanda M.; Corak, Keo E.; Lipka, Alexander E; McCord, Per (2023). Data from: A First Look at the Ability to Use Genomic Prediction for Improving Ratooning Ability of Sugarcane. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1528986

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Keywords

genomic selection sugarcane ratooning genomics GWAS NP301 candidate gene molecular trait association sugarcane production data.gov ARS

Licence

U.S. Public Domain