sugarcane.10501.SNPs_.432.Inds_.vcf (17.71 MB)
Data from: A First Look at the Ability to Use Genomic Prediction for Improving Ratooning Ability of Sugarcane
dataset
posted on 2023-12-18, 20:22 authored by Md S. Sarif, Amanda M. Hulse-Kemp, Keo E. Corak, Alexander E Lipka, Per McCordThe filtered VCF file of 10501 SNPs from the 432 individuals in this study. This dataset was used for genome-wide association study (GWAS) and genomic prediction of sugarcane ratooning ability. It was developed using Rapid Genomics Capture-Seq technology.
Resources in this dataset:
- Resource Title: SNP data for 432 Sugarcane Clones File Name: sugarcane.10501.SNPs.432.Inds.vcf
Funding
USDA-ARS: 6030-21000-006-00-D
USDA-ARS: 6066-21310-005-00D
History
Data contact name
Islam, Md. SarifulData contact email
md.islam@usda.govPublisher
Ag Data CommonsTemporal Extent Start Date
2016-11-01Temporal Extent End Date
2018-11-01Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-80.795418480411,26.602987010735],[-80.795418480411,26.753646232271],[-80.580224012956,26.753646232271],[-80.580224012956,26.602987010735],[-80.795418480411,26.602987010735]]]},"type":"Feature","properties":{}}]}ISO Topic Category
- farming
National Agricultural Library Thesaurus terms
genomics; prediction; ratooning; sugarcane; single nucleotide polymorphism; marker-assisted selection; genome-wide association studyOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 301
Pending citation
- No
Public Access Level
- Public