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Data and code from: Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, Pseudocysta perseae (Hemiptera: Tingidae)

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posted on 2024-06-17, 21:53 authored by MICHAEL BOSCHMICHAEL BOSCH

Datasets and R script used for article accepted to Environmental Entomology (June 5, 2024):"Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, Pseudocysta perseae (Hemiptera: Tingidae)."
Authors: Bosch, Michael; Sun, Xiuxiu; Hall, Sierra; Love, Ken; Cox, David; Matsumoto, Tracie; Liang, Peishih; Follett, Peter; Stockton, Dara

Rep_GLMM_UHKCES.csv: Data used for repeated measures generalized linear mixed model for abundance surveys conducted at the University of Hawai'i Kona Cooperative Extension Service orchard.

Rep_GLMM_CC.csv: Data used for repeated measures generalized linear mixed model for abundance surveys conducted at the Captain Cook orchard.

ALB_Honaunau.csv: Data summarizing avocado lace bug abundance from leaves collected from the Honaunau orchard. Is to be used to perform generalized linear mixed models between lace bug abundance and sugars in corresponding avocado leaves.

LeafTraits_Honaunau.csv: Data for performing generalized linear mixed models between avocado lace bug abundance and several avocado leaf traits from leaves collected from the Honaunau orchard.

Sugars_Honaunau.csv: Data for performing generalized linear mixed models between avocado lace bug abundance and avocado leaf sugar content from leaves collected from the Honaunau orchard.

Fig1_Average.csv: Data averaging avocado lace bug abundance across trees surveyed at the University of Hawai'i Kona Cooperative Extension Service and Captain Cook orchards. To be used to generating figure 1 in manuscript.

Fig1_Sites.csv: Data on avocado lace bug abundance across trees surveyed at the University of Hawai'i Kona Cooperative Extension Service and Captain Cook orchards. To be used to generating figure 1 in manuscript.

LogOdds_USDAGermplasm.csv: Data used for performing a repeated measures proportional odds logistic regression on avocado lace bug infestation category surveys conducted at the USDA Germplasm Repository.


EE_Rscript.R: R script used to run analyses conducted and construct figures presented in the corresponding manuscript. Required R packages include:

  • tidyverse
  • reshape2
  • DHARMa
  • scales
  • glmmTMB
  • emmeans
  • cowplot
  • repolr

Funding

USDA-ARS: 2040-22430-026-00D

History

Data contact name

Bosch, Michael, J.

Data contact email

michael.bosch@usda.gov

Publisher

Ag Data Commons

Intended use

This dataset contains all the necessary data and script to recreate analyses and figures associated with the corresponding manuscript.

Use limitations

The data and script provided are specific to the study areas and surveys conducted in the corresponding manuscript.

Temporal Extent Start Date

2021-06-01

Temporal Extent End Date

2023-05-01

Theme

  • Not specified

ISO Topic Category

  • farming

National Agricultural Library Thesaurus terms

Pseudacysta perseae; Hemiptera; Tingidae; species abundance; plant characteristics; avocados; Persea americana; insect infestations; invasive species

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 304

Pending citation

  • No

Public Access Level

  • Public

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