CottonGen Breeding Information Management System (BIMS)
BIMS, the Breeding Information Management System, is a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store, manage, archive and analyze their private breeding program. Breeders can load data in templates provided as well as output from the Field Book App, an android app for collecting phenotype data. In addition to the private breeders BIMS, users without accounts can also view the publicly available breeding data. The fully developed version will allow users to:
-
Fully integrate their data with publicly available genomic, genetic and breeding data in the community database.
-
Utilize their integrated pedigree, phenotype and genotype data in performing genomic analysis and making breeding decisions.
-
Use open-source new genomics tool and breeding decision tools with seamless access to HPC.
Resources in this dataset:Resource Title: Website Pointer for CottonGen BIMS (Breeding Information Management System).
File Name: Web Page, url: https://www.cottongen.org/bims
BIMS, the Breeding Information Management System, is a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store, manage, archive and analyze their private breeding program. Breeders can load data in templates provided as well as output from the Field Book App, an android app for collecting phenotype data. In addition to the private breeders BIMS users without accounts can also view the publicly available breeding data. The fully developed version will allow users to:
-
Fully integrate their data with publicly available genomic, genetic and breeding data in the community database
-
Utilize their integrated pedigree, phenotype and genotype data in performing genomic analysis and making breeding decisions.
-
Use open-source new genomics tool and breeding decision tools with seamless access to HPC.
Funding
Cotton Incorporated
USDA-ARS: Crop Germplasm Research Unit, College Station, TX
Bayer CropScience
Dow Chemical Company: Phytogen
Monsanto Company
Washington State University
USDA-NIFA: 2009-51181-06036
USDA-NIFA: 2009-51181-05808
History
Data contact name
Main, DorrieData contact email
dorrie@wsu.eduPublisher
MainLab, Washington State UniversityIntended use
To provide a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store, manage, archive and analyze their private breeding program.Theme
- Not specified
ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
Internet; databases; genomics; breeding; translation (genetics); applied research; cotton; infrastructure; quantitative trait loci; pathogens; germplasm conservation; pedigree; unigenes; expressed sequence tags; loci; taxonomy; germplasm; Gossypium raimondii; genetic markers; publications; genetic databases; plant breeding; plant genetics; computer software; genotypeOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 301
Pending citation
- No
Public Access Level
- Public