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Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling

Name: Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling
Published: 2024-06-11T06:52:15+00:00
License: https://rightsstatements.org/vocab/UND/1.0/
Keywords: raw sequence reads

dataset

posted on 2024-06-11, 06:52 authored by USDA ARS

Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial community profiling in a mock community, hybrid catfish samples (digesta, gill swab, skin swab) and water samples (pond water and holding tank).

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2022-04-29

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA833472

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It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA833472 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

raw sequence reads

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