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Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations

Version 3 2025-08-12, 21:36
Version 2 2025-06-13, 22:17
Version 1 2025-04-14, 15:42
dataset
posted on 2025-08-12, 21:36 authored by Michael R. Fulcher, Glen Groben
<p dir="ltr"><i>Colletotrichum shisoi</i> is a fungal plant pathogen of <i>Perilla frutescens</i>, a mint species cultivated in some Asian countries but considered invasive in the United States. This dataset contains a new, highly contiguous genome sequence generated from the North American <i>C. shisoi</i> isolate FDWSRU 21-072, which has been proposed for use as a biological control agent of invasive <i>P. frutescens</i>. Long-read PacBio sequencing produced a nuclear genome assembly of 48 contigs and 86.9 Mb. Structural and functional gene annotations were generated with the FunAnnotate v1.8.16 pipeline. Repetitive contents were annotated using RepeatMasker v4.1.5. A complete mitochondrial genome was assembled using MitoHifi and Flye, and mitochondrial annotations were predicted using MFannot.</p>

Funding

USDA-ARS: 8044-22000-047-000-D

History

Data contact name

Fulcher, Michael, R.

Data contact email

michael.fulcher@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2025-03-19

Theme

  • Non-geospatial

ISO Topic Category

  • farming

National Agricultural Library Thesaurus terms

Colletotrichum; plant pathogenic fungi; Perilla frutescens; mint; data collection; nucleotide sequences; biological control agents; invasive species; genome assembly; genes

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 304

ARIS Log Number

425124

Pending citation

  • No

Public Access Level

  • Public