Coffea arabica Genome sequencing and assembly

dataset

posted on 2025-03-07, 02:56 authored by USDA-ARS

Coffea arabica L. Typica is one of the main economic crops predominantly cultivated in high altitude regions. Typica is susceptible to pest and diseases, which can significantly affect crop yields and lead to economic losses. In this study, we presented a chromosome scale genome of Coffea arabica L. Typica by assembling using PacBio HiFi sequences along with Hi-C data. The final genome size reached to 1.13Gb, with assigned to 22 chromosomes.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2025-01-24

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA1215012

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It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1215012 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Coffea arabica eEukaryotes genome sequencing and assembly raw sequence reads eRawSequenceReads

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