Cimex lectularius Genome Annotations v0.5.3

<p>The Baylor College of Medicine recently sequenced and annotated the <i>Cimex lectularius</i> genome as part of the i5k pilot project. The <i>C. lectularius</i> research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2.</p> <p>The bed bug, <i>Cimex lectularius</i>, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae.</p> <p>This dataset presents the Cimex lectularius gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Cimex lectularius genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.</p> <p>NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.</p> <p>If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Cimex lectularius genome annotations v0.5.3 for genome assembly Cimex lectularius v1.0.</p> <p>File Name: Cimex_lectularius_BCM_version_0.5.3_annotations.tar_.gz</p><p>Resource Description: </p><p>The attached tar.gz archive (Cimex_lectularius_BCM_version_0.5.3_annotations.tar.gz) contains the following folders:</p> <p>BCM_version_0.5.3-Primary_Gene_Set. This folder contains evidence files in gff3 format underlying the final gene predictions.</p> <p>BCM_version_0.5.3-Primary_Gene_Set/primary_gene_set. This folder contains the following files:</p> <p>CLEC.CDS.fna.gz. CDS sequences of <i>Cimex lectularius</i> genome annotations v0.5.3.</p> <p>CLEC.faa.gz. Amino acid sequences of <i>Cimex lectularius</i> genome annotations v0.5.3.</p> <p>CLEC.fna.gz. cDNA sequences of <i>Cimex lectularius</i> genome annotations v0.5.3.</p> <p>CLEC.Models.gff3.gz. Gff3 of all gene predictions of <i>Cimex lectularius</i> genome annotations v0.5.3.</p> <p>CLEC.Models-NALmod.gff3.gz. Gff3 of all gene predictions of <i>Cimex lectularius</i> genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.</p><p></p></li></ul>