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Cimex Lectularius Genome Assembly 1.0
The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2.
The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae.
This dataset presents the Cimex lectularius genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource: http://www.ncbi.nlm.nih.gov/assembly?LinkName=bioproject_assembly_all&from_uid=167477. Assembly method details will be available in a forthcoming publication.
If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
Resources in this dataset:
Resource Title: Cimex lectularius genome assembly v1.0 fasta and agp files for contigs and scaffolds.
File Name: Cimex_lectularius_genome_assembly_v1-0.tar_.gz
The attached tar.gz archive (Cimex_lectularius_genome_assembly_v1-0.tar.gz) contains the following files:
Clec_Bbug02212013.contigs.fa.gz. This file contains the sequence information of the contigs of the Cimex lectularius 1.0 assembly.
Clec_Bbug02212013.genome.fa.gz. This file contains the sequence information of the scaffolds of the Cimex lectularius 1.0 assembly.
Clec_Bbug02212013.genome.agp. This file contains information linking the contigs and scaffolds for the Cimex lectularius 1.0 assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml
Alfred P. Sloan Foundation
National Human Genome Research Institute
National Institutes of Health
National Science Foundation
U.S. Department of Housing and Urban Development
Data contact nameBenoit, Joshua B.
Data contact emailbenoitja@UCMAIL.UC.EDU
PublisherAg Data Commons
- Not specified
ISO Topic Category
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus termsgenome assembly
Public Access Level