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Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production

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posted on 2024-06-11, 05:41 authored by University of California, Los Angeles

De novo sequencing and assembly of genome, transcriptome, chloroplast, and mitochondrion, to the level of chromosomes, via combination of short reads, long reads, and restriction fragment-based optical map. Generation and analysis of astaxanthin-deficient mutants.

Funding

U.S. Department of Agriculture, 2013-67012-21272

U.S. Department of Energy, 449B

National Institutes of Health, 5T32HG002536–13

U.S. Department of Energy, DE-AC02-05CH11231

U.S. Department of Energy, DE-FC02-02ER63421

Gordon and Betty Moore Foundation, GBMF3070

Howard Hughes Medical Institute, Niyogi

National Institutes of Health, P41GM103445

U.S. Department of Energy, SISGRKN

National Science Foundation, Westcott

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-03-02

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA377789

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Keywords

Chromochloris zofingiensis SAG 211-14 eEukaryotes genome sequencing and assembly raw sequence reads genome sequencing assembly map transcriptome

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