Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production

dataset

posted on 2024-11-23, 21:49 authored by University of California, Los Angeles

De novo sequencing and assembly of genome, transcriptome, chloroplast, and mitochondrion, to the level of chromosomes, via combination of short reads, long reads, and restriction fragment-based optical map. Generation and analysis of astaxanthin-deficient mutants.

Funding

DOE: 449B

GBMF: GBMF3070

DOE: DE-AC02-05CH11231

USDA: 2013-67012-21272

NSF: Westcott

DOE: DE-FC02-02ER63421

NIH: P41GM103445

DOE: SISGRKN

HHMI: Niyogi

NIH: 5T32HG002536–13

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-03-02

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA377789

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA377789 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Chromochloris zofingiensis SAG 211-14 eEukaryotes genome sequencing and assembly raw sequence reads genome sequencing assembly map transcriptome

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