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Chelonus insularis Official Gene Set OGSv1.0

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posted on 2023-12-18, 18:40 authored by Meng Mao, Gaelen Burke

The Official Gene Set cheins_OGSv1.0 is an integration (NCBI Chelonus insularis Annotation Release 100) from NCBI's eukaryotic annotation pipeline v8.4 with manual annotations (via the Apollo manual annotation software). QC and Merge of the dataset was performed using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit).


Resources in this dataset:

  • Resource Title: Chelonus insularis Official Gene Set OGSv1.0.

    File Name: cheins_OGSv1.0.tar.gz

    Resource Description: The attached tar.gz archive (cheins_OGSv1.0.tar.gz) contains the following files:

    cheins_OGSv1.0_cds.fa. CDS sequences of Chelonus insularis genome annotations OGSv1.0.

    cheins_OGSv1.0_pep.fa. Amino acid sequences of Chelonus insularis genome annotations OGSv1.0.

    cheins_OGSv1.0_trans.fa. Transcript sequences of Chelonus insularis genome annotations OGSv1.0.

    cheins_OGSv1.0.gff. Gff3 of all gene predictions of Chelonus insularis genome annotations OGSv1.0

    ID_map_report.txt. A mapping file describing ID and name updates from dataset NCBI Chelonus insularis Annotation Release 100.

    readme. This file briefly describes how the dataset Chelonus insularis Official Gene Set OGSv1.0 was generated.

    proviral_segments_Cins.gff3. Gff3 file of the boundaries of proviral segments int he Chelonus insularis genome.

Funding

National Science Foundation: DEB-1916788

History

Data contact name

Burke, Gaelen

Data contact email

grburke@uga.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2015-01-01

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-80.694580078125,26.693094414035]},"type":"Feature","properties":{}}]}

Geographic location - description

University of Florida Everglades Research and Education Center in Belle Glade, FL

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; prediction; sequence analysis; nucleotide sequences; Biological Sciences; Chelonus

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Mao, Meng; Burke, Gaelen (2021). Chelonus insularis Official Gene Set OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1523023

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    Categories

    Keywords

    Insectsi5kChelonus insularis

    Licence

    CC BY-SA 4.0

    Exports

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