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Chelonus insularis Official Gene Set OGSv1.0

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posted on 2023-12-18, 18:40 authored by Meng Mao, Gaelen Burke
<p>The Official Gene Set cheins_OGSv1.0 is an integration (<a href="https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Chelonus_insularis/100/">NCBI Chelonus insularis Annotation Release 100</a>) from NCBI's eukaryotic annotation pipeline v8.4 with manual annotations (via the Apollo manual annotation software). QC and Merge of the dataset was performed using the GFF3toolkit software (<a href="https://github.com/NAL-i5K/GFF3toolkit">https://github.com/NAL-i5K/GFF3toolkit</a>). </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Chelonus insularis Official Gene Set OGSv1.0.</p> <p>File Name: cheins_OGSv1.0.tar.gz</p><p>Resource Description: The attached tar.gz archive (cheins_OGSv1.0.tar.gz) contains the following files:</p> <p>cheins_OGSv1.0_cds.fa. CDS sequences of Chelonus insularis genome annotations OGSv1.0.</p> <p>cheins_OGSv1.0_pep.fa. Amino acid sequences of Chelonus insularis genome annotations OGSv1.0.</p> <p>cheins_OGSv1.0_trans.fa. Transcript sequences of Chelonus insularis genome annotations OGSv1.0.</p> <p>cheins_OGSv1.0.gff. Gff3 of all gene predictions of Chelonus insularis genome annotations OGSv1.0</p> <p>ID_map_report.txt. A mapping file describing ID and name updates from dataset NCBI Chelonus insularis Annotation Release 100.</p> <p>readme. This file briefly describes how the dataset Chelonus insularis Official Gene Set OGSv1.0 was generated.</p> <p>proviral_segments_Cins.gff3. Gff3 file of the boundaries of proviral segments int he Chelonus insularis genome.</p></li></ul><p></p>

Funding

National Science Foundation: DEB-1916788

History

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Data contact name

Burke, Gaelen

Data contact email

grburke@uga.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2015-01-01

Theme

  • Not specified

Geographic Coverage

Geographic location - description

University of Florida Everglades Research and Education Center in Belle Glade, FL

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; prediction; sequence analysis; nucleotide sequences; Biological Sciences; Chelonus

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Mao, Meng; Burke, Gaelen (2021). Chelonus insularis Official Gene Set OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1523023

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