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Ceratitis capitata genome assembly v1.1

dataset

posted on 2024-02-13, 12:59 authored by Alfred M. Handler, Alexie Papanicolaou, Richard A. Gibbs, Kim C. Worley, Shwetha C. Murali, Sandra L. Lee, Donna M. Muzny, Hsu Chao, Huyen Dinh, Harshavardhan Doddapaneni, Jiaxin Qu, Shannon Dugan-Perez, Yi Han, Stephen Richards

The Baylor College of Medicine has sequenced and annotated the Ceratitis capitata genome as part of the i5k pilot project. This dataset presents the Ceratitis capitata genome v1.1. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Resources in this dataset:

Resource Title: Ceratitis capitata genome assembly v1.1.

File Name: cercap_BCM_assembly_v1-0.tar.gz
Resource Description: The attached tar archive contains the scaffolds, contigs, and agp file for the Ceratitis capitata 1.1 assembly.
A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Richards, Stephen

Data contact email

stephenr@bcm.edu

Publisher

Ag Data Commons

Theme

Not specified

ISO Topic Category

biota

Ag Data Commons Group

Insects - i5K

National Agricultural Library Thesaurus terms

genomics

Pending citation

Public Access Level

Public

Preferred dataset citation

Handler, Alfred M.; Papanicolaou, Alexie; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2019). Ceratitis capitata genome assembly v1.1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503813

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Keywords

genome assembly sequence analysis Ceratitis capitata

Licence

CC BY-SA 4.0

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