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Capra hircus breed:San Clemente Genome sequencing and assembly

dataset

posted on 2024-06-11, 05:23 authored by USDA ARS

This is a de novo assembly of the domestic goat (Capra hircus) exclusively using long reads. The assembly was scaffolded using a combination of optical map data, and Hi-C contact alignment graphs. Subsequent scaffolding was confirmed using a Radiation Hybrid map for the goat. This study was a proof of principle that a combination of cutting edge sequencing technologies can be used to efficiently create accurate chromosome-scale scaffolds.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2016-08-11

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA290100

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA290100 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Capra hircus eEukaryotes raw sequence reads

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