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Bovine genome assembly by Cattle Genome Sequencing International Consortium

dataset
posted on 2024-11-23, 21:33 authored by Baylor College of Medicine, Cattle Genome Sequencing International Consortium, USDA - Agricultural Research Service, U.S. Meat Animal Research Center
The Cattle Genome Sequencing International Consortium, led by the Baylor College of Medicine, originally sequenced the Bos taurus genome at 6x coverage using a whole genome shotgun (WGS) strategy. The initial assembly (Btau_4.2) was later replaced by newer versions by incorporating high quality finished data, where available (Btau_4.6.1). The latest version takes the UMD 3.1 assembly contigs and scaffolds and incorporates ~19x Pacific Biosciences long-read data using the PBJelly method (English, Richards et al. 2012).

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2004-10-01

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA12555

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA12555 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Categories

    Keywords

    Bos tauruseEukaryotes

    Licence

    Copyright Undetermined

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