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Bos taurus isolate:L1 Dominette 01449 registration number 42190680 | breed:Hereford Genome sequencing and assembly

dataset
posted on 2024-06-11, 05:43 authored by USDA ARS
This is a de novo assembly of Bos taurus using long reads for assembly and short reads for scaffolding and polishing. The assembly was scaffolded using a combination of in vitro chromosome conformation capture sequencing, optical maps, and a recombination map. Subsequent scaffolding was confirmed using genetic linkage maps and a Radiation Hybrid map. This material is based on work supported by the National Institute of Food and Agriculture, U.S. Department of Agriculture, National Research Support Project NRSP8 (Cattle Genome Coordination)

Funding

U.S. Department of Agriculture, 3040-31320-012-00D

U.S. Department of Agriculture, 8042-31000-104-00D

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-08-20

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA391427

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA391427 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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