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BGER_OGSv1-0.tar.gz (30.92 MB)

Blattella germanica Official Gene Set OGSv1.0

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posted on 2024-02-13, 12:51 authored by Evelien Jongepier, Mark C. Harrison, Emily C. Jennings, Alexander Martynov, Maria Dolors Piulachs, Monica Poelchau, Andrew J. Rosendale, Jack Scanlan, Ayako Wada-Katsumata, Guillem Ylla, Hugh M. Robertson, Coby Schal, Xavier Belles, Stephen Richards, Erich G. Bornberg-Bauer

The Blattella germanica genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Blattella germanica research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: QC of community-curated models from the Apollo software was performed using the GFF3toolkit function, and errors were fixed using OGSv1.0 was generated by merging the gene set BGER_v0.6.2 (provided by E. Jongepier, doi:10.1038/s41559-017-0459-1) with 1) QC'd and error-corrected community-curated models and 2) semi-automatically predicted miRNAs (references: doi:10.1038/srep37736 and . Subsequently, i5k Workspace ( IDs were generated for all features.

Resources in this dataset:

  • Resource Title: Blattella germanica Official Gene Set OGSv1.0.

    File Name: BGER_OGSv1-0.tar.gz

    Resource Description: The attached tar.gz archive (BGER_OGSv1-0.tar.gz) contains the following files: * BGER_OGSv1-0_CDS.fa. CDS sequences of Blattella germanica genome annotations OGSv1.0. * BGER_OGSv1-0_pep.fa. Amino acid sequences of Blattella germanica genome annotations OGSv1.0. * BGER_OGSv1-0_trans.fa. Transcript sequences of Blattella germanica genome annotations OGSv1.0. * BGER_OGSv1-0.gff. Gff3 of all gene predictions of Blattella germanica genome annotations OGSv1.0 * BGER_OGSv1-0_idmap.txt. A mapping file describing ID and name updates from dataset Blattella germanica genome annotations v0.5.3. * readme. This file briefly describes how the dataset Blattella germanica Official Gene Set OGSv1.0 was generated.


Deutsche Forschungsgemeinschaft: BO2544/11-1

U.S. Department of Housing and Urban Development: NCHHU-0017-13

National Science Foundation: IOS-1557864

Alfred P. Sloan Foundation: 2013-5-35 MBE


Data contact name

Harrison, Mark

Data contact email


Ag Data Commons


  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Blattella germanica; genes; prediction; models; microRNA

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Jongepier, Evelien; Harrison, Mark C.; Jennings, Emily C.; Martynov, Alexander; Piulachs, Maria Dolors; Poelchau, Monica; Rosendale, Andrew J.; Scanlan, Jack; Wada-Katsumata, Ayako; Ylla, Guillem; Robertson, Hugh M.; Schal, Coby; Belles, Xavier; Richards, Stephen; Bornberg-Bauer, Erich G. (2018). Blattella germanica Official Gene Set OGSv1.0. Ag Data Commons.

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