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Beta vulgaris subsp. vulgaris cultivar:KDH13 Genome sequencing and assembly

dataset
posted on 2024-06-11, 05:12 authored by NWISRL-ARS-USDA, SeqWright Inc.
The genome of the sugar beet (Beta vulgaris subsp. vulgaris) doubled haploid line (KDH13) was sequenced using Illumina next generation sequencing HiSeq2000 platform. This line (PI663862) was released by USDA-ARS as genetic stock resistant to beet curly top. The whole genome sequencing shotgun (WGS) of two genomic libraries; a short-insert paired end (PE) and a 2kb-insert mate-pair (MP) resulted in 82.9 Gb of sequence data. BvvSeq-1 sugar beet genome assembly released in May 2013 is the first public assembly of a public sugar beet germplasm (KDH13). There are other sugar beet whole genome sequencing efforts elsewhere including the draft RefBeet_0.9 sequence released by the European BeetSeq consortium. Additionally, there are many published genetic linkage maps, ESTs and BACs sequencing projects that have been implemented with an aim of developing advanced genetics knowledge for a better crop.

Funding

Agricultural Research Service, BSDF

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2013-05-12

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA176558

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA176558 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Categories

    Keywords

    Beta vulgaris subsp. vulgariseEukaryotesgenome sequencing

    Licence

    Copyright Undetermined

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