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Beta vulgaris subsp. vulgaris cultivar:EL10 Genome sequencing and assembly

dataset
posted on 2024-06-11, 05:46 authored by USDA-ARS
Beets have been grown for table sugar (sucrose) for over 150 years, but Beta vulgaris has been grown for much longer, as a leafy chard, as a root vegetable, and as fodder, from which sugar beet was derived. Crop types, and especially wild forms of subspecies maritima, are important sources of variability for sugar beet improvement, especially disease resistance. As an out-crossing species, genetic diversity generally is partitioned within populations, rather than between populations as for self fertile crops. Thus, sugar beet breeding has largely followed a population improvement strategy, where the key feature is less rapid fixation of desirable alleles into cultivars, versus strict selfing. Context and clarity afforded by molecular markers often helps to characterize the distribution of genetic diversity, and locate genes for important agronomic traits. The most appropriate, and least divisible, framework for ultimate context and clarity is a high-quality genome assembly. We developed a nine-scaffold assembly (plus 31 smaller orphan contigs) for this n = x = 9 chromosome species. Distribution of genetic diversity among crop types, characterizing disease resistance genes, and uncovering structural chromosome variants are a few of the short-term goals we have for this genome sequence.

Funding

Agricultural Research Service, 3635-21220-015-00D

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2018-02-04

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA413079

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA413079 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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