Barley Genotyping SNPs Annotated using SNPMeta
SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at https://github.com/MorrellLAB/SNPMeta.
These are SNPs on two Illumina GoldenGate genotyping arrays and one 9k iSelect genotyping array. The ascertainment scheme for the SNPs is available in Close, Timothy J., et al. "Development and implementation of high-throughput SNP genotyping in barley." BMC genomics 10.1 (2009): 1.
Sponsorship: US National Institute for Food and Agriculture (NIFA) (2011-68002-30029); USDA National Needs Fellowship (USDA NIFA 2011-38420-20068); USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D); Kansas State University
Resources in this dataset:
Resource Title: Link to DRUM catalog record.
File Name: Web Page, url: https://conservancy.umn.edu/handle/11299/181367
Funding
USDA-NIFA: 2011-68002-30029
USDA-NIFA: 2011-38420-20068
USDA-ARS: 5430-21000-006-00D
History
Data contact name
Kono, Thomas J.Y.Data contact email
konox006@umn.eduPublisher
University of MinnesotaTemporal Extent Start Date
2013-01-01Temporal Extent End Date
2013-12-31Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-93.18353,44.98619]},"type":"Feature","properties":{}}]}ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
single nucleotide polymorphism; DNA; nucleotide sequences; genes; genotyping; barley; genomics; amino acid sequences; amino acids; amino acid substitution; methionine; stop codonPending citation
- No
Public Access Level
- Public
