Ag Data Commons
Browse
- No file added yet -

Athalia rosae Official Gene Set OGSv1.0

Download (22.16 MB)
dataset
posted on 2024-02-13, 13:07 authored by Jan Philip Oeyen, Masatsugu Hatakeyama, Daniel S.T. Hughes, Stephen Richards, Bernhard Misof, Oliver Niehuis

The Athalia rosae genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Athalia rosae research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: https://github.com/NAL-i5K/I5KNAL_OGS/wiki. OGSv1.0 was generated by merging gene set AROS-V0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output.


Resources in this dataset:

  • Resource Title: Athalia rosae Official Gene Set OGSv1.0.

    File Name: athros_OGS_v1-0.tar.gz

    Resource Description: The attached tar.gz archive (athros_OGS_v1-0.tar.gz) contains the following files:

    • ATHROS_OGSv1-0_cds.fa. CDS sequences of Athalia rosae genome annotations OGSv1.0.
    • ATHROS_OGSv1-0_pep.fa. Amino acid sequences of Athalia rosae genome annotations OGSv1.0.
    • ATHROS_OGSv1-0_transcript.fa. Transcript sequences of Athalia rosae genome annotations OGSv1.0.
    • ATHROS_OGSv1-0.gff3. Gff3 of all gene predictions of Athalia rosae genome annotations OGSv1.0
    • ATHROS_Manual2OGSv1.0_id_mapping.log. A mapping file describing ID and name updates from dataset Athalia rosae genome annotations v0.5.3.
    • readme_athros_OGS_v1-0_release. This file briefly describes how the Athalia rosae Official Gene Set OGSv1.0 was generated.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Oeyen, Jan Philip

Data contact email

janphilipoyen@gmail.com

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Athalia rosae; genes; prediction; models

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Oeyen, Jan Philip; Hatakeyama, Masatsugu; Hughes, Daniel S.T.; Richards, Stephen; Misof, Bernhard; Niehuis, Oliver (2018). Athalia rosae Official Gene Set OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1459566

Usage metrics

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC