Assess the cecal microbiota composition in Campylobacter-positive and Campylobacter-negative adult broiler chickens using 16S rRNA gene sequencing analysis. Raw sequence reads

We sought to access if the gut microbiota differs between Campylobacter-positive farms and Campylobacter-negative farms. We selected 6 commercial broiler farms with previously known Campylobacter status (3 positive and 3 negative). We obtained 520 ceca from adult broilers of these farms. We did 16S rRNA sequencing analysis to reveal the cecal microbiota difference between Campylobacter-positive and Campylobacter-negative farms.