Anoplophora glabripennis Official Gene Set OGSv1.2
The Anoplophora glabripennis genome was recently sequenced, assembled and annotated as part of the i5k pilot project by the Baylor College of Medicine, in collaboration with the McKenna Laboratory at the University of Memphis. The Anoplophora glabripennis research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.2 was generated by merging gene set AGLA-c0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output.
Resources in this dataset:
Resource Title: Anoplophora glabripennis Official Gene Set OGSv1.2.
File Name: AGLA_OGS_v1.2.tar.gz
Resource Description: The attached tar.gz archive (AGLA_OGS_v1.2.tar.gz) contains the following files:
agla_OGS_v1_2_cds.fa.gz. CDS sequences of Anoplophora glabripennis genome annotations OGSv1.2.
agla_OGS_v1_2_peptide.fa.gz. Amino acid sequences of Anoplophora glabripennis genome annotations OGSv1.2.
agla_OGS_v1_2_cDNA.fa.gz. Transcript sequences of Anoplophora glabripennis genome annotations OGSv1.2.
agla_OGS_v1_2.gff3.gz. Gff3 of all gene predictions of Anoplophora glabripennis genome annotations OGSv1.2.
Funding
National Human Genome Research Institute: U54 HG003273
National Science Foundation: 1355169
History
Data contact name
McKenna, Duane D.Data contact email
dmckenna@memphis.eduPublisher
Ag Data CommonsTheme
- Not specified
ISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
genomics; genes; Anoplophora glabripennis; models; predictionPending citation
- No
Public Access Level
- Public