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AGLA_OGS_v1.2.tar.gz (24.37 MB)

Anoplophora glabripennis Official Gene Set OGSv1.2

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posted on 2024-02-15, 17:22 authored by Duane MckennaDuane Mckenna, Daniel S.T. Hughes, Erin D. Scully, Yannick Pauchet, Roy Kirsch, Robert F. Mitchell, Seung-Joon Ahn, Deanna Arsala, Joshua B. Benoit, Tiffany Bledsoe, Julia Bowsher, André Busch, Bernarda Calla, Anna Childers, Lorna B. Cohen, Amanda Dolan, Markus Friedrich, Karl M. Glastad, Michael A.D. Goodisman, Stephanie Haddad, Iris M. Vargas Jentzsch, J. Spencer Johnston, Jeffery W. Jones, Leslie A. Kuhn, Jeremy A. Lynch, David R. Nelson, Subba R. Palli, Kristen A. Panfilio, Daniel Pers, Monica Poelchau, Honghu Quan, Ann M. Ray, Joseph P. Rinehart, Hugh M. Robertson, Richard Roehrdanz, Andrew J. Rosendale, Alex Torson, George D. Yocum, Stephen Richards

The Anoplophora glabripennis genome was recently sequenced, assembled and annotated as part of the i5k pilot project by the Baylor College of Medicine, in collaboration with the McKenna Laboratory at the University of Memphis. The Anoplophora glabripennis research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.2 was generated by merging gene set AGLA-c0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output.

Resources in this dataset:

  • Resource Title: Anoplophora glabripennis Official Gene Set OGSv1.2.

    File Name: AGLA_OGS_v1.2.tar.gz

    Resource Description: The attached tar.gz archive (AGLA_OGS_v1.2.tar.gz) contains the following files:

    agla_OGS_v1_2_cds.fa.gz. CDS sequences of Anoplophora glabripennis genome annotations OGSv1.2.

    agla_OGS_v1_2_peptide.fa.gz. Amino acid sequences of Anoplophora glabripennis genome annotations OGSv1.2.

    agla_OGS_v1_2_cDNA.fa.gz. Transcript sequences of Anoplophora glabripennis genome annotations OGSv1.2.

    agla_OGS_v1_2.gff3.gz. Gff3 of all gene predictions of Anoplophora glabripennis genome annotations OGSv1.2.


National Human Genome Research Institute: U54 HG003273

National Science Foundation: 1355169


Data contact name

McKenna, Duane D.

Data contact email


Ag Data Commons


  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; Anoplophora glabripennis; models; prediction

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

McKenna, Duane D.; Hughes, Daniel S.T.; Scully, Erin D.; Pauchet, Yannick; Kirsch, Roy; Mitchell, Robert F.; Ahn, Seung-Joon; Arsala, Deanna; Benoit, Joshua B.; Bledsoe, Tiffany; Bowsher, Julia; Busch, André; Calla, Bernarda; Childers, Anna; Cohen, Lorna B.; Dolan, Amanda; Friedrich, Markus; Glastad, Karl M.; Goodisman, Michael A.D.; Haddad, Stephanie; Vargas Jentzsch, Iris M.; Johnston, J. Spencer; Jones, Jeffery W.; Kuhn, Leslie A.; Lynch, Jeremy A.; Nelson, David R.; Palli, Subba R. ; Panfilio, Kristen A.; Pers, Daniel; Poelchau, Monica; Quan, Honghu; Ray, Ann M.; Rinehart, Joseph P.; Robertson, Hugh M. ; Roehrdanz, Richard; Rosendale, Andrew J. ; Torson, Alex; Yocum, George D.; Richards, Stephen (2018). Anoplophora glabripennis Official Gene Set OGSv1.2. Ag Data Commons.

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