posted on 2024-02-15, 17:22authored byDuane MckennaDuane Mckenna, Daniel S.T. Hughes, Erin D. Scully, Yannick Pauchet, Roy Kirsch, Robert F. Mitchell, Seung-Joon Ahn, Deanna Arsala, Joshua B. Benoit, Tiffany Bledsoe, Julia Bowsher, André Busch, Bernarda Calla, Anna Childers, Lorna B. Cohen, Amanda Dolan, Markus Friedrich, Karl M. Glastad, Michael A.D. Goodisman, Stephanie Haddad, Iris M. Vargas Jentzsch, J. Spencer Johnston, Jeffery W. Jones, Leslie A. Kuhn, Jeremy A. Lynch, David R. Nelson, Subba R. Palli, Kristen A. Panfilio, Daniel Pers, Monica F. PoelchauMonica F. Poelchau, Honghu Quan, Ann M. Ray, Joseph P. Rinehart, Hugh M. Robertson, Richard Roehrdanz, Andrew J. Rosendale, Alex Torson, George D. Yocum, Stephen Richards
<p>The <em>Anoplophora glabripennis</em> genome was recently sequenced, assembled and annotated as part of the i5k pilot project by the Baylor College of Medicine, in collaboration with the McKenna Laboratory at the University of Memphis. The <em>Anoplophora glabripennis</em> research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.2 was generated by merging gene set AGLA-c0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Anoplophora glabripennis Official Gene Set OGSv1.2.</p> <p>File Name: AGLA_OGS_v1.2.tar.gz</p><p>Resource Description: The attached tar.gz archive (AGLA_OGS_v1.2.tar.gz) contains the following files:</p>
<p>agla_OGS_v1_2_cds.fa.gz. CDS sequences of Anoplophora glabripennis genome annotations OGSv1.2.</p>
<p>agla_OGS_v1_2_peptide.fa.gz. Amino acid sequences of Anoplophora glabripennis genome annotations OGSv1.2.</p>
<p>agla_OGS_v1_2_cDNA.fa.gz. Transcript sequences of Anoplophora glabripennis genome annotations OGSv1.2.</p>
<p>agla_OGS_v1_2.gff3.gz. Gff3 of all gene predictions of Anoplophora glabripennis genome annotations OGSv1.2.</p>
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Funding
National Human Genome Research Institute: U54 HG003273
McKenna, Duane D.; Hughes, Daniel S.T.; Scully, Erin D.; Pauchet, Yannick; Kirsch, Roy; Mitchell, Robert F.; Ahn, Seung-Joon; Arsala, Deanna; Benoit, Joshua B.; Bledsoe, Tiffany; Bowsher, Julia; Busch, André; Calla, Bernarda; Childers, Anna; Cohen, Lorna B.; Dolan, Amanda; Friedrich, Markus; Glastad, Karl M.; Goodisman, Michael A.D.; Haddad, Stephanie; Vargas Jentzsch, Iris M.; Johnston, J. Spencer; Jones, Jeffery W.; Kuhn, Leslie A.; Lynch, Jeremy A.; Nelson, David R.; Palli, Subba R. ; Panfilio, Kristen A.; Pers, Daniel; Poelchau, Monica; Quan, Honghu; Ray, Ann M.; Rinehart, Joseph P.; Robertson, Hugh M. ; Roehrdanz, Richard; Rosendale, Andrew J. ; Torson, Alex; Yocum, George D.; Richards, Stephen (2018). Anoplophora glabripennis Official Gene Set OGSv1.2. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1439440