Angus Sequence Data: Animal 16378
Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 16378.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset . In the diagram, the two reads would correspond to read 1 and read 3.
Resources in this dataset:
Resource Title: Animal 16378 Sequence Data - SCINet.
File Name: Web Page, url: https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node29313/
tar file containing 14 files. The files are:
- RAPiD-Genomics_F112_CSU_136201_P001_WA07_i5-515_i7-103_S7_L003_R1_001.fastq.gz
- RAPiD-Genomics_F112_CSU_136201_P001_WA07_i5-515_i7-103_S7_L003_R2_001.fastq.gz
- RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S143_L002_R1_001.fastq.gz
- RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S143_L002_R2_001.fastq.gz
- RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S7_L001_R1_001.fastq.gz
- RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S7_L001_R2_001.fastq.gz
- RAPiD-Genomics-F114-CSU-136201-P001-WA07-i5-515-i7-103_S7_L003_R1_001.fastq.gz
- RAPiD-Genomics-F114-CSU-136201-P001-WA07-i5-515-i7-103_S7_L003_R2_001.fastq.gz
- RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L001_R1_001.fastq.gz
- RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L001_R2_001.fastq.gz
- RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L002_R1_001.fastq.gz
- RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L002_R2_001.fastq.gz
- RAPiD-Genomics_F116_CSU_136201_P001_WA07_i5-515_i7-103_S362_L002_R1_001.fastq.gz
- RAPiD-Genomics_F116_CSU_136201_P001_WA07_i5-515_i7-103_S362_L002_R2_001.fastq.gz
SCINet users: The .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node29313/
See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransfer
Globus users: The files can also be accessed through Globus by following this data link.The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.
Funding
Agricultural Research Service
History
Data contact name
Blackburn, HarveyData contact email
harvey.blackburn@usda.govPublisher
Ag Data CommonsTemporal Extent Start Date
2012-01-01Temporal Extent End Date
2013-12-31Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-106.56610600168,41.222307724193]},"type":"Feature","properties":{}}]}Geographic location - description
John E. Rouse-Colorado State University Beef Improvement Center, WYISO Topic Category
- biota
- farming
National Agricultural Library Thesaurus terms
nucleotide sequences; Bovidae; cattle; beef; Angus; germplasmOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 101
Pending citation
- No
Public Access Level
- Public