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Angus Sequence Data: Animal 103-3

dataset
posted on 2023-11-30, 09:48 authored by Harvey Blackburn

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.

The National Animal Germplasm Program does not have germplasm for this animal.

There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset . In the diagram, the two reads would correspond to read 1 and read 3.


Resources in this dataset:

  • Resource Title: Animal 103-3 Sequence Data - SCINet.

    File Name: Web Page, url: https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node33202/

    tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WA03_i5-515_i7-99_S3_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WA03_i5-515_i7-99_S3_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA03-i5-515-i7-99_S139_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA03-i5-515-i7-99_S139_L002_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA03-i5-515-i7-99_S3_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA03-i5-515-i7-99_S3_L001_R2_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WA03-i5-515-i7-99_S3_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WA03-i5-515-i7-99_S3_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA03_i5-515_i7-99_S3_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA03_i5-515_i7-99_S3_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA03_i5-515_i7-99_S3_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA03_i5-515_i7-99_S3_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WA03_i5-515_i7-99_S358_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WA03_i5-515_i7-99_S358_L002_R2_001.fastq.gz

    The .tar file can be accessed/retrieved with valid SCINet account at this location: /KEEP/ADCdatastorage/NAL/published/node33202/103-3.tar

    See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransfer

    Globus users: The files can also be accessed through Globus by following this data link.The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.

Funding

Agricultural Research Service

History

Data contact name

Blackburn, Harvey

Data contact email

harvey.blackburn@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2012-01-01

Temporal Extent End Date

2013-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-106.56610600168,41.222307724193]},"type":"Feature","properties":{}}]}

Geographic location - description

John E. Rouse-Colorado State University Beef Improvement Center, WY

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

nucleotide sequences; Bovidae; cattle; beef; Angus; germplasm

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 101

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Blackburn, Harvey (2021). Angus Sequence Data: Animal 103-3. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1529248

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