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Agriculturally sourced multidrug-resistant Escherichia coli for use as control strains

dataset
posted on 2024-12-09, 22:40 authored by James E. Wells, Lisa M. DursoLisa M. Durso, Abasiofiok M. Ibekwe, Jonathan G. Frye, Manan SharmaManan Sharma, Clinton F. Williams, Md ShamimuzzamanMd Shamimuzzaman

Global efforts emphasize the need to incorporate human, animal, and environmental components into coordinated and standardized surveillance programs. This requires microbiological methods be standardized, including using standardized positive and negative bacterial control strains. There is a need to provide bacterial control strains that are sourced from and relevant for environmental surveillance efforts.

· Two control strains are available in support of environmental antibiotic resistance surveillance efforts.

· Escherichia coli ARS-C301 is extended-spectrum β-lactamase positive and tetracycline resistant.

· E. coli ARS-C101 is cefotaxime and tetracycline susceptible and serves as a negative control.

· Strains are DNA sequenced, and deposited in publicly available culture collections.

Strain Availability:

ARS-C101 (negative control): WGS is available from NCBI, accession number PRJNA1003888, BioSample B-65681; Isolate is available from the ARS Culture Collection https://nrrl.ncaur.usda.gov/ (Accession number: B-65681); and from ATCC (isolate ID BAA-3340).

ARS-C301 (positive control): WGS is available from NCBI, accession number PRJNA1003888, BioSample SAMN36910816; Isolate is available from the ARS Culture Collection https://nrrl.ncaur.usda.gov/ (Accession number: B-65682); from ATCC (isolate ID BAA-3341); and from Microbiologics as a quantitative pellet, via a custom order (contact industrial microbiology QC products regional sales manager by email requesting a quote for ARS-C301 https://www.microbiologics.com/contact-us).

Funding

USDA-ARS

History

Data contact name

Durso, Lisa M.

Data contact email

lisa.durso@usda.gov

Publisher

Ag Data Commons

Intended use

Submission contains material in support of two new agriculturally sourced Escherichia coli control strains, including phenotypic and genotypic information.

Temporal Extent Start Date

2020-07-15

Temporal Extent End Date

2024-11-22

Theme

  • Non-geospatial

ISO Topic Category

  • biota

Ag Data Commons Group

  • ARS Culture Collection

National Agricultural Library Thesaurus terms

multiple drug resistance; Escherichia coli; humans; environmental monitoring; antibiotic resistance; beta-lactamase; tetracycline; cefotaxime; DNA; beta-lactamase bacteria; phenotype; genotype; sequence analysis

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 108
  • 212

ARIS Log Number

405910

Pending citation

  • Yes

Public Access Level

  • Public