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Agricultural E. coli isolates for use as controls in surveillance of ESBL and tetracycline resistance in the environment.

dataset

posted on 2024-06-11, 05:02 authored by USDA-ARS

The ARS-C101 isolate (SAMN36909132) is the negative control; it is negative for cefotaxime resistance, extended-spectrum beta-lactamase production, and tetracycline resistance. The submitted genome consists of three contigs: contig_1 (CP132979), contig_4 (CP132980), and contig_5 (CP132978). The ARS-C301 isolate (SAMN36910816) is the positive control. It is positive for cefotaxime resistance, extended-spectrum beta-lactamase production, and tetracycline resistance). The submitted genome consists of 4 contigs: contig_1_1 (CP132983), contig_2 (CP132982), contig_3 (CP132984), and contig_4_1 (CP132981).

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-08-22

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

Public Access Level

Public

Accession Number

PRJNA1003888

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1003888 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Escherichia coli eBacteria genome sequencing

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