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Abiotic Treatment to Common Bean Plants Results in an Altered Endophytic Seed Microbiome

dataset
posted on 2024-01-27, 05:08 authored by Michigan State University
Common bean plants (Phaseolus vulgaris L. (var. Redhawk)) were grown in an environmental growth chamber under 3 different growth conditions: control plants with ample water provided, water-withholding plants given 66% less water, and nutrient-addition plants given 1/2X Hoagland solution (nutrient solution) in place of water. Amplicon sequencing of the V4 region of the 16s rRNA gene and the ITS gene of the seed endophytic DNA from each condition was performed using the Illumina MiSeq platform to assess seed bacterial/archaeal and fungal community structure, respectively. Code for analysis is available on GitHub: https://github.com/ShadeLab/BioRxiv_Seed_Microbiome_2020/blob/master/README.md

Funding

U.S. Department of Agriculture, 2019-67019-29305

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-05-29

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

metagenomics; sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA635871

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