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A reference assembly for the legume Vicia villosa

dataset
posted on 2024-01-27, 00:32 authored by USDA ARS
Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop in the United States Midwest due to an ability to withstand harsh winters. The highly heterozygous nature of the V. villosa assembly precluded prior genome assembly using short-reads, leaving this species without suitable genomic resources for genetic selection. A reference-quality genome assembly was prepared from low error rate long sequence reads to improve genetic-based trait selection of this species. This reference genome assembly was further filtered for duplicate sequences and was scaffolded using Hi-C reads to provide the first contiguous assembly for the species.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-04-24

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA868110

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