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2009-2010 Outbreak: Salmonella enterica subsp. enterica serovar Typhimurium Genome Sequencing

dataset
posted on 2024-01-26, 22:41 authored by USDA ARS
To better understand the genomic relationship of Salmonella enterica subsp. enterica serovar Typhimurium isolates sharing the JPXX01.0014 pulse field gel electrophoresis (PFGE) type, we sequenced and analyzed the whole genome shotgun assemblies of five clinical isolates that were isolated across the United States between 2009 and 2010. Three additional isolates possessing the same PFGE type collected from celery in 2002, raw pecans in 2009 and from California pond water in 2009 were also sequenced. Comparison of all of these sequences with the seven completed S. Typhimurium genomes clearly demonstrate that all of these isolates are nearly identical to S. Typhimurium strain 14082, which has been utilized in laboratory experiments for over two decades.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-01-15

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA174826

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